Targeted protein degradation as a novel approach to study protein function in human platelets

Platelets are small cells in the blood that are that play an important role in stopping a bleeding but when inappropriately activated also contribute to thrombosis and cardiovascular disease. One of the complications with studying how platelets maintain normal haemostatic control and/or promote thrombosis is that they lack a nucleus thereby prohibiting genetic approaches to reduce protein levels. Most of our present knowledge therefore derives from genetic mouse models and pharmacological targeting of signaling pathways, each having its own drawbacks associated with species differences and pharmacological non-specificity.

Here we propose to optimise a protein degradation approach in human platelets using rationally designed small molecule degraders called PROTACs (PROteolysis TArgeting Chimeras) to investigate signaling pathways involved in their haemostatic and thrombotic function. PROTACs are small heterobifunctional molecules that target proteins for ubiquitination leading to proteasomal degradation. We recently made the discovery by proteomic analysis that a generic tyrosine kinase PROTAC leads to potent and specific degradation of BTK kinase within hours, demonstrating that human platelets have the complete proteasome required for degradation. These are exciting findings as it is the first time that a human platelet ‘knockout’ has been generated. In this proposal, we will expand these observations and design, generate and optimize PROTACs against BTK kinase in order to develop a highly efficient technology to study signaling pathways in human platelets. We anticipate that the use and optimalisation of PROTACs will be transformative to the platelet
research community and significantly reduce the use of genetic mouse models.

In our own grouping, the Bristol Platelet Group, we estimate that the PROTAC approach can potentially replace ~70% of our genetic mouse work. At the moment we breed 25 different colonies at an average colony size of 30 mice to generate 4 experimental pairs per month, an annual usage of 1200 mice per annum. Reducing this by 70% would replace 840 mice annually using PROTAC approaches. Considering the number of platelet papers published worldwide using multiple genetic knockout mouse models (~3,500 in last 20 years), and the estimation that each paper on average uses at least 250 mice (including generation and breeding), the number of mice is in the range of >44,000 per year. If we estimate that 20% of these could be replaced by PROTAC-mediated degradation in human platelets, >8800 mice could be replaced annually.

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PhD Studentship

Status:

Inactive

Principal investigator

Professor Ingeborg Hers

Institution

University of Bristol

Co-Investigator

Professor Varinder Aggarwal

Grant reference number

NC/V001957/1

Award date:

Jan 2021 - Jan 2024

Grant amount

£90,000